Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033721.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8033722.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8033723.1 | |
| CAI8033724.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8033725.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8033726.1 | MONOCARBOXYLATE TRANSPORTER |
| CAI8033727.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI8033728.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8033729.1 | |
| CAI8033730.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8033731.1 | BLR5969 PROTEIN |
| CAI8033732.1 | ACYL-COA DEHYDROGENASE |
| CAI8033733.1 | |
| CAI8033734.1 | |
| CAI8033735.1 | |
| CAI8033736.1 | |
| CAI8033737.1 | |
| CAI8033738.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8033739.1 | PHP DOMAIN PROTEIN |
| CAI8033744.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8033743.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8033742.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8033741.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8033740.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8033745.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8033746.1 | |
| CAI8033748.1 | |
| CAI8033747.1 | |
| CAI8033749.1 | |
| CAI8033750.1 | |
| CAI8033751.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8033752.1 | |
| CAI8033753.1 | |
| CAI8033755.1 | |
| CAI8033754.1 | |
| CAI8033756.1 | |
| CAI8033757.1 | |
| CAI8033758.1 | |
| CAI8033760.1 | |
| CAI8033761.1 | |
| CAI8033759.1 | |
| CAI8033763.1 | |
| CAI8033762.1 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
| CAI8033764.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18 |
| CAI8033765.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18 |
| CAI8033768.1 | UBIQUITINATION FACTOR E4 |
| CAI8033767.1 | UBIQUITINATION FACTOR E4 |
| CAI8033766.1 | |
| CAI8033770.1 | UBIQUITINATION FACTOR E4 |
| CAI8033769.1 | UBIQUITINATION FACTOR E4 |
