Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033821.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8033822.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8033823.1 | |
| CAI8033824.1 | |
| CAI8033825.1 | LIPOPROTEIN-RELATED |
| CAI8033826.1 | AMIDOHYDROLASE |
| CAI8033827.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8033828.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8033829.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8033830.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI8033831.1 | BLR3401 PROTEIN |
| CAI8033832.1 | BLR3401 PROTEIN |
| CAI8033833.1 | |
| CAI8033834.1 | PROTEIN BARK BEETLE |
| CAI8033839.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8033838.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8033837.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8033835.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8033836.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8033841.1 | PROTEIN CBG23806 |
| CAI8033840.1 | PROTEIN CBG23806 |
| CAI8033842.1 | - |
| CAI8033843.1 | - |
| CAI8033844.1 | - |
| CAI8033845.1 | |
| CAI8033846.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8033847.1 | |
| CAI8033848.1 | |
| CAI8033849.1 | |
| CAI8033850.1 | |
| CAI8033851.1 | |
| CAI8033852.1 | |
| CAI8033853.1 | |
| CAI8033854.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8033855.1 | |
| CAI8033856.1 | |
| CAI8033857.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8033858.1 | |
| CAI8033859.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8033860.1 | |
| CAI8033861.1 | |
| CAI8033862.1 | |
| CAI8033863.1 | |
| CAI8033864.1 | |
| CAI8033865.1 | |
| CAI8033866.1 | |
| CAI8033867.1 | METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED |
| CAI8033868.1 | METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED |
| CAI8033869.1 | METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED |
| CAI8033870.1 |
