Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033971.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8033972.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8033973.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8033974.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8033975.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI8033976.1 | |
| CAI8033977.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8033979.1 | TRANSAMIDASE |
| CAI8033978.1 | TRANSAMIDASE |
| CAI8033980.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8033986.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8033984.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8033983.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8033985.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8033982.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8033981.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8033990.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8033991.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8033989.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8033988.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8033987.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8033992.1 | ADENYLOSUCCINATE SYNTHETASE |
| CAI8033994.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8033993.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8033996.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8033995.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8033997.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8033998.1 | PHYTOENE DEHYDROGENASE |
| CAI8034000.1 | HEAVY METAL TRANSPORTER |
| CAI8033999.1 | HEAVY METAL TRANSPORTER |
| CAI8034001.1 | METAL TRANSPORT PROTEIN HI_1621-RELATED |
| CAI8034003.1 | TRNA SULFURTRANSFERASE |
| CAI8034002.1 | TRNA SULFURTRANSFERASE |
| CAI8034004.1 | |
| CAI8034006.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8034005.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8034007.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8034008.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8034009.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8034010.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8034011.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8034012.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8034013.1 | |
| CAI8034014.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8034015.1 | MEMBRANE PROTEIN-RELATED |
| CAI8034016.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8034017.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034018.1 | |
| CAI8034019.1 | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE |
| CAI8034020.1 | CORRINOID ADENOSYLTRANSFERASE |
