Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034071.1 | |
| CAI8034073.1 | REPLICATION PROTEIN A-RELATED |
| CAI8034072.1 | REPLICATION PROTEIN A-RELATED |
| CAI8034074.1 | |
| CAI8034075.1 | |
| CAI8034076.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI8034077.1 | |
| CAI8034078.1 | |
| CAI8034079.1 | |
| CAI8034080.1 | |
| CAI8034081.1 | |
| CAI8034082.1 | |
| CAI8034083.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8034084.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8034085.1 | IDURONATE 2-SULFATASE |
| CAI8034086.1 | FO SYNTHASE (COFH) |
| CAI8034087.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI8034088.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8034089.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8034090.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8034091.1 | 39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL |
| CAI8034092.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI8034093.1 | SORBITOL DEHYDROGENASE |
| CAI8034094.1 | |
| CAI8034095.1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
| CAI8034096.1 | |
| CAI8034097.1 | FERROCHELATASE |
| CAI8034098.1 | AMINOMETHYLTRANSFERASE |
| CAI8034099.1 | L-RHAMNOSE ISOMERASE |
| CAI8034100.1 | NUCLEOTIDE KINASE |
| CAI8034101.1 | SHIKIMATE KINASE |
| CAI8034102.1 | 3-DEHYDROQUINATE SYNTHASE |
| CAI8034103.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8034104.1 | |
| CAI8034108.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034109.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034106.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034105.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034107.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034110.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034112.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034111.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8034113.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8034116.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8034117.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8034114.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8034115.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8034118.1 | ETHANOLAMINEPHOSPHOTRANSFERASE |
| CAI8034120.1 | AT29763P-RELATED |
| CAI8034119.1 | AT29763P-RELATED |
