Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034222.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8034223.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8034224.1 | |
| CAI8034225.1 | |
| CAI8034221.1 | |
| CAI8034226.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8034227.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8034228.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8034229.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8034231.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8034230.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI8034232.1 | BONUS, ISOFORM C-RELATED |
| CAI8034233.1 | |
| CAI8034234.1 | |
| CAI8034235.1 | RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS |
| CAI8034236.1 | |
| CAI8034237.1 | |
| CAI8034238.1 | |
| CAI8034239.1 | |
| CAI8034240.1 | |
| CAI8034241.1 | |
| CAI8034242.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8034243.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8034244.1 | |
| CAI8034245.1 | |
| CAI8034249.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8034248.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8034247.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8034250.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8034246.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8034251.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8034252.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8034253.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8034254.1 | |
| CAI8034255.1 | TITIN |
| CAI8034256.1 | GUANYLATE BINDING PROTEIN |
| CAI8034257.1 | GUANYLATE BINDING PROTEIN |
| CAI8034258.1 | |
| CAI8034259.1 | GUANYLATE BINDING PROTEIN |
| CAI8034260.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8034261.1 | |
| CAI8034263.1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
| CAI8034262.1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
| CAI8034264.1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| CAI8034265.1 | |
| CAI8034267.1 | MOLTING PROTEIN MLT-4 |
| CAI8034268.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8034266.1 | MOLTING PROTEIN MLT-4 |
| CAI8034269.1 | ANKYRIN REPEAT-CONTAINING |
| CAI8034270.1 | ANKYRIN DOMAIN-CONTAINING |
