Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034169.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034171.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034173.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034174.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034175.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034177.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034176.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034178.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H |
| CAI8034179.1 | HISTIDINE BIOSYNTHESIS BIFUNCTIONAL PROTEIN |
| CAI8034180.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8034181.1 | ABC TRANSPORTER B FAMILY |
| CAI8034182.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8034183.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8034184.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8034185.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8034186.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8034187.1 | WSCD FAMILY MEMBER CG9164 |
| CAI8034188.1 | WSCD FAMILY MEMBER CG9164 |
| CAI8034189.1 | WSCD FAMILY MEMBER CG9164 |
| CAI8034190.1 | |
| CAI8034191.1 | |
| CAI8034194.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8034193.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8034192.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8034200.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034199.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034198.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034197.1 | DISCS LARGE |
| CAI8034195.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034196.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034201.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034202.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI8034206.1 | RIBOSOME BIOGENESIS PROTEIN BRIX |
| CAI8034205.1 | RIBOSOME BIOGENESIS PROTEIN BRIX |
| CAI8034204.1 | RIBOSOME BIOGENESIS PROTEIN BRIX |
| CAI8034203.1 | |
| CAI8034207.1 | RIBOSOME BIOGENESIS PROTEIN BRIX |
| CAI8034208.1 | |
| CAI8034209.1 | |
| CAI8034210.1 | |
| CAI8034211.1 | |
| CAI8034212.1 | |
| CAI8034214.1 | |
| CAI8034213.1 | |
| CAI8034215.1 | SEC24-RELATED PROTEIN |
| CAI8034216.1 | CENTROMERE PROTEIN V |
| CAI8034218.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8034217.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8034219.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8034220.1 |
