Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034021.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI8034022.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8034023.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI8034024.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI8034025.1 | THERMOSPERMINE SYNTHASE ACAULIS5 |
| CAI8034026.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8034028.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8034027.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8034029.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8034030.1 | AROM/DEHYDROQUINATE SYNTHASE |
| CAI8034031.1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| CAI8034032.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8034033.1 | AMMONIUM TRANSPORTER |
| CAI8034034.1 | BLR5612 PROTEIN |
| CAI8034035.1 | BLR5612 PROTEIN |
| CAI8034036.1 | |
| CAI8034037.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8034038.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8034039.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8034040.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8034041.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8034042.1 | UVRABC SYSTEM PROTEIN B |
| CAI8034043.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8034044.1 | |
| CAI8034045.1 | MALEYLACETOACETATE ISOMERASE |
| CAI8034047.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034048.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034049.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034046.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034050.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034051.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034052.1 | DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE |
| CAI8034053.1 | RHO FAMILY GTPASE |
| CAI8034054.1 | |
| CAI8034055.1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT DELTA-RELATED |
| CAI8034056.1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT DELTA-RELATED |
| CAI8034057.1 | |
| CAI8034058.1 | |
| CAI8034059.1 | HISTONE H4 |
| CAI8034060.1 | |
| CAI8034061.1 | PEPTIDYLPROLYL ISOMERASE |
| CAI8034063.1 | |
| CAI8034062.1 | |
| CAI8034064.1 | |
| CAI8034065.1 | |
| CAI8034066.1 | |
| CAI8034067.1 | UBIQUITIN THIOLESTERASE PROTEIN OTUB |
| CAI8034069.1 | NISCHARIN RELATED |
| CAI8034068.1 | NISCHARIN RELATED |
| CAI8034070.1 | NISCHARIN RELATED |
