Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033771.1 | |
| CAI8033773.1 | UBIQUITINATION FACTOR E4 |
| CAI8033772.1 | UBIQUITINATION FACTOR E4 |
| CAI8033776.1 | UNCHARACTERIZED |
| CAI8033774.1 | UNCHARACTERIZED |
| CAI8033775.1 | UNCHARACTERIZED |
| CAI8033777.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8033778.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8033779.1 | |
| CAI8033780.1 | PROTEIN SIDEKICK |
| CAI8033782.1 | ANKYRIN REPEAT FAMILY A |
| CAI8033784.1 | |
| CAI8033781.1 | SI:CH211-189E2.2 |
| CAI8033783.1 | SI:CH211-189E2.2 |
| CAI8033785.1 | |
| CAI8033786.1 | |
| CAI8033787.1 | |
| CAI8033789.1 | GLUTAMINE SYNTHETASE |
| CAI8033788.1 | GLUTAMINE SYNTHETASE |
| CAI8033790.1 | |
| CAI8033791.1 | |
| CAI8033792.1 | |
| CAI8033793.1 | GABA-B RECEPTOR |
| CAI8033794.1 | |
| CAI8033796.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| CAI8033797.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| CAI8033795.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| CAI8033798.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| CAI8033800.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| CAI8033799.1 | |
| CAI8033807.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033808.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033806.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033805.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033804.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033803.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033802.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033801.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033809.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033810.1 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| CAI8033811.1 | |
| CAI8033812.1 | |
| CAI8033814.1 | |
| CAI8033813.1 | |
| CAI8033815.1 | |
| CAI8033816.1 | |
| CAI8033817.1 | |
| CAI8033818.1 | PORCUPINE |
| CAI8033819.1 | RNA-SPLICING LIGASE RTCB |
| CAI8033820.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
