Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8033919.1 | |
| CAI8033923.1 | |
| CAI8033924.1 | |
| CAI8033918.1 | |
| CAI8033925.1 | |
| CAI8033926.1 | |
| CAI8033927.1 | |
| CAI8033928.1 | |
| CAI8033930.1 | |
| CAI8033929.1 | |
| CAI8033931.1 | |
| CAI8033932.1 | |
| CAI8033933.1 | GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7 |
| CAI8033934.1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| CAI8033935.1 | |
| CAI8033936.1 | |
| CAI8033937.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8033938.1 | XANTHINE DEHYDROGENASE |
| CAI8033939.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8033940.1 | |
| CAI8033941.1 | |
| CAI8033942.1 | |
| CAI8033943.1 | PROTEIN GAMETE EXPRESSED 1 |
| CAI8033944.1 | |
| CAI8033945.1 | |
| CAI8033946.1 | |
| CAI8033947.1 | |
| CAI8033948.1 | |
| CAI8033949.1 | |
| CAI8033950.1 | NUCLEOTIDE KINASE |
| CAI8033953.1 | PRE-MRNA SPLICING FACTOR |
| CAI8033952.1 | PRE-MRNA SPLICING FACTOR |
| CAI8033951.1 | PRE-MRNA SPLICING FACTOR |
| CAI8033954.1 | PRE-MRNA SPLICING FACTOR |
| CAI8033955.1 | PRE-MRNA SPLICING FACTOR |
| CAI8033958.1 | METHIONINE SYNTHASE |
| CAI8033957.1 | METHIONINE SYNTHASE |
| CAI8033956.1 | |
| CAI8033959.1 | METHYLCOBAMIDE:COM METHYLTRANSFERASE MTBA |
| CAI8033960.1 | SLR1189 PROTEIN |
| CAI8033961.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8033962.1 | SLL1193 PROTEIN |
| CAI8033963.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8033964.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8033965.1 | |
| CAI8033966.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8033967.1 | |
| CAI8033968.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8033969.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8033970.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
