Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034322.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8034321.1 | SERINE/THREONINE PROTEIN KINASE |
| CAI8034323.1 | |
| CAI8034324.1 | |
| CAI8034326.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8034325.1 | |
| CAI8034327.1 | |
| CAI8034328.1 | |
| CAI8034329.1 | |
| CAI8034330.1 | ANKYRIN REPEAT PROTEIN |
| CAI8034331.1 | PRESEQUENCE PROTEASE |
| CAI8034333.1 | PRESEQUENCE PROTEASE |
| CAI8034332.1 | PRESEQUENCE PROTEASE |
| CAI8034335.1 | PRESEQUENCE PROTEASE |
| CAI8034334.1 | PRESEQUENCE PROTEASE |
| CAI8034336.1 | |
| CAI8034337.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8034338.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8034339.1 | CNH DOMAIN CONTAINING |
| CAI8034340.1 | PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4 |
| CAI8034344.1 | HEPATOMA-DERIVED GROWTH FACTOR-RELATED |
| CAI8034341.1 | CORONIN |
| CAI8034342.1 | CORONIN |
| CAI8034343.1 | |
| CAI8034345.1 | CYSTEINE DIOXYGENASE |
| CAI8034347.1 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8034346.1 | PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8034349.1 | ALPHA-MANNOSIDASE |
| CAI8034348.1 | ALPHA-MANNOSIDASE |
| CAI8034350.1 | ALPHA-MANNOSIDASE |
| CAI8034351.1 | GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1 |
| CAI8034352.1 | SIGNAL PEPTIDE PEPTIDASE |
| CAI8034353.1 | SIGNAL PEPTIDE PEPTIDASE |
| CAI8034354.1 | DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE |
| CAI8034355.1 | VESICULAR MANNOSE-BINDING LECTIN |
| CAI8034358.1 | AXIN |
| CAI8034357.1 | |
| CAI8034356.1 | |
| CAI8034359.1 | AXIN |
| CAI8034361.1 | AXIN |
| CAI8034360.1 | AXIN |
| CAI8034362.1 | SHC TRANSFORMING PROTEIN |
| CAI8034364.1 | SOLUTE CARRIER FAMILY 25 |
| CAI8034363.1 | SOLUTE CARRIER FAMILY 25 |
| CAI8034365.1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
| CAI8034366.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71 |
| CAI8034367.1 | PA14 DOMAIN-CONTAINING PROTEIN |
| CAI8034372.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8034371.1 | LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8034369.1 | LAMININ G-LIKE DOMAIN-CONTAINING PROTEIN |
