About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8034521.1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
CAI8034522.1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
CAI8034523.1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
CAI8034524.1GABA-B RECEPTOR
CAI8034525.1GABA-B RECEPTOR
CAI8034528.1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
CAI8034527.1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
CAI8034526.1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
CAI8034529.1BONUS, ISOFORM C-RELATED
CAI8034530.1
CAI8034533.1
CAI8034532.1
CAI8034531.1
CAI8034535.1DEHYDROGENASES, SHORT CHAIN
CAI8034534.1DEHYDROGENASES, SHORT CHAIN
CAI8034536.1DEHYDROGENASES, SHORT CHAIN
CAI8034537.1
CAI8034538.1PTHR43509
CAI8034539.1SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
CAI8034540.1
CAI8034541.139S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL
CAI8034542.1HYCCIN RELATED
CAI8034543.13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
CAI8034544.1
CAI8034545.1
CAI8034546.1DNA2/NAM7 HELICASE FAMILY
CAI8034547.1
CAI8034548.1
CAI8034549.1
CAI8034551.1
CAI8034550.1
CAI8034552.1
CAI8034555.1PROTEIN PHOSPHATASE 2C
CAI8034554.1PROTEIN PHOSPHATASE 2C
CAI8034553.1UBIQUITIN-CONJUGATING ENZYME E2
CAI8034559.1MYOSIN HEAVY CHAIN, NON-MUSCLE
CAI8034560.1MYOSIN HEAVY CHAIN, NON-MUSCLE
CAI8034558.1MYOSIN HEAVY CHAIN, NON-MUSCLE
CAI8034557.1MYOSIN HEAVY CHAIN, NON-MUSCLE
CAI8034561.1MYOSIN HEAVY CHAIN, NON-MUSCLE
CAI8034563.1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
CAI8034562.1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
CAI8034556.1
CAI8034564.1
CAI8034565.1
CAI8034567.1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
CAI8034566.1TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
CAI8034574.1ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
CAI8034573.1ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
CAI8034572.1ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
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