Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034570.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034571.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034569.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034568.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034576.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034577.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034575.1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
| CAI8034578.1 | ZINC FINGER PROTEIN 207 |
| CAI8034579.1 | |
| CAI8034580.1 | |
| CAI8034581.1 | |
| CAI8034582.1 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED |
| CAI8034583.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8034584.1 | |
| CAI8034585.1 | |
| CAI8034586.1 | |
| CAI8034590.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8034591.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8034589.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8034588.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8034587.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8034592.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034596.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034595.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034594.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034593.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034600.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034599.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034598.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034597.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034603.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034602.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034601.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034604.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034606.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8034605.1 | |
| CAI8034607.1 | |
| CAI8034609.1 | GABA-B RECEPTOR |
| CAI8034608.1 | GABA-B RECEPTOR |
| CAI8034610.1 | GABA-B RECEPTOR |
| CAI8034611.1 | GABA-B RECEPTOR |
| CAI8034612.1 | |
| CAI8034613.1 | |
| CAI8034617.1 | |
| CAI8034615.1 | |
| CAI8034616.1 | |
| CAI8034614.1 | |
| CAI8034618.1 | |
| CAI8034620.1 | |
| CAI8034619.1 |
