Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034670.1 | NUCLEAR HORMONE RECEPTOR FAMILY-RELATED-RELATED |
| CAI8034672.1 | NUCLEAR HORMONE RECEPTOR |
| CAI8034676.1 | N-MYC DOWNSTREAM REGULATED |
| CAI8034675.1 | N-MYC DOWNSTREAM REGULATED |
| CAI8034674.1 | N-MYC DOWNSTREAM REGULATED |
| CAI8034673.1 | N-MYC DOWNSTREAM REGULATED |
| CAI8034677.1 | TRANSMEMBRANE PROTEIN 143 FAMILY MEMBER |
| CAI8034678.1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| CAI8034679.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8034680.1 | DOCKING PROTEIN RELATED |
| CAI8034681.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8034682.1 | |
| CAI8034685.1 | DOCKING PROTEIN RELATED |
| CAI8034683.1 | |
| CAI8034684.1 | |
| CAI8034686.1 | |
| CAI8034688.1 | DOCKING PROTEIN RELATED |
| CAI8034687.1 | DOCKING PROTEIN RELATED |
| CAI8034689.1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
| CAI8034691.1 | |
| CAI8034690.1 | |
| CAI8034692.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8034693.1 | LD33804P |
| CAI8034695.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034694.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034698.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034697.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034696.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034699.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034700.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034701.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8034702.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8034703.1 | NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED |
| CAI8034704.1 | CORE-BINDING FACTOR, BETA SUBUNIT |
| CAI8034705.1 | |
| CAI8034706.1 | CYTOCHROME B-245 LIGHT CHAIN |
| CAI8034707.1 | CYTOCHROME B-245 LIGHT CHAIN |
| CAI8034708.1 | UNCHARACTERIZED |
| CAI8034709.1 | ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE |
| CAI8034710.1 | ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE |
| CAI8034711.1 | 60S RIBOSOMAL PROTEIN L13 |
| CAI8034713.1 | RIKEN CDNA 4931406P16 GENE |
| CAI8034712.1 | RIKEN CDNA 4931406P16 GENE |
| CAI8034714.1 | RIKEN CDNA 4931406P16 GENE |
| CAI8034716.1 | PHOSPHOLIPID ACYLTRANSFERASE |
| CAI8034715.1 | PHOSPHOLIPID ACYLTRANSFERASE |
| CAI8034717.1 | |
| CAI8034718.1 | CENTROSOMAL PROTEIN OF 89 KDA |
| CAI8034719.1 | CENTROSOMAL PROTEIN OF 89 KDA |
| CAI8034720.1 |
