Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034771.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC |
| CAI8034772.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8034773.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8034774.1 | OROTATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8034775.1 | |
| CAI8034776.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8034777.1 | INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCU-RELATED-RELATED |
| CAI8034778.1 | INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCV |
| CAI8034779.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8034780.1 | |
| CAI8034781.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8034782.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8034783.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8034784.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8034785.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8034786.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8034787.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| CAI8034788.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8034789.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8034790.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8034791.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8034792.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8034793.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8034794.1 | |
| CAI8034795.1 | |
| CAI8034796.1 | PROSTAGLANDIN REDUCTASE |
| CAI8034797.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8034798.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8034799.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8034800.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8034801.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8034802.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8034803.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8034804.1 | |
| CAI8034806.1 | |
| CAI8034805.1 | |
| CAI8034807.1 | |
| CAI8034808.1 | |
| CAI8034809.1 | |
| CAI8034810.1 | |
| CAI8034811.1 | 60S RIBOSOMAL PROTEIN L24 |
| CAI8034812.1 | 60S RIBOSOMAL PROTEIN L24 |
| CAI8034813.1 | 60S RIBOSOMAL PROTEIN L24 |
| CAI8034814.1 | 60S RIBOSOMAL PROTEIN L24 |
| CAI8034815.1 | PHOSPHATIDYLINOSITOL GLYCAN |
| CAI8034816.1 | PHOSPHATIDYLINOSITOL GLYCAN |
| CAI8034818.1 | NEUGRIN |
| CAI8034817.1 | NEUGRIN |
| CAI8034819.1 | NEUGRIN |
| CAI8034820.1 |
