Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8034921.1 | 5'-NUCLEOTIDASE-RELATED |
| CAI8034922.1 | |
| CAI8034923.1 | YEATS DOMAIN |
| CAI8034926.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034925.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034924.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034927.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034928.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034929.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034930.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8034931.1 | |
| CAI8034933.1 | C. ELEGANS HOMEOBOX |
| CAI8034932.1 | C. ELEGANS HOMEOBOX |
| CAI8034934.1 | |
| CAI8034935.1 | |
| CAI8034936.1 | |
| CAI8034938.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8034937.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8034940.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8034939.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8034941.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8034942.1 | RIBOSE 5-PHOSPHATE ISOMERASE-RELATED |
| CAI8034943.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI8034944.1 | ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN |
| CAI8034945.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8034946.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8034947.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8034948.1 | |
| CAI8034949.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8034951.1 | PROTEIN PITCHFORK |
| CAI8034950.1 | PROTEIN PITCHFORK |
| CAI8034952.1 | |
| CAI8034953.1 | |
| CAI8034954.1 | |
| CAI8034955.1 | |
| CAI8034957.1 | |
| CAI8034956.1 | |
| CAI8034958.1 | |
| CAI8034959.1 | |
| CAI8034960.1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8034966.1 | MOLTING PROTEIN MLT-4 |
| CAI8034965.1 | ANKYRIN DOMAIN-CONTAINING |
| CAI8034964.1 | ANKYRIN DOMAIN-CONTAINING |
| CAI8034963.1 | MOLTING PROTEIN MLT-4 |
| CAI8034962.1 | MOLTING PROTEIN MLT-4 |
| CAI8034961.1 | MOLTING PROTEIN MLT-4 |
| CAI8034967.1 | |
| CAI8034968.1 | |
| CAI8034970.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8034971.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
