About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8012431.1ATP-DEPENDENT CLP PROTEASE
CAI8012432.1ATP-DEPENDENT CLP PROTEASE
CAI8012433.1DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
CAI8012434.1DNA-DIRECTED RNA POLYMERASE
CAI8012435.1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
CAI8012436.1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
CAI8012437.1MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB
CAI8012438.1SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA
CAI8012439.16-PHOSPHOGLUCONATE PHOSPHATASE
CAI8012440.1AROM/DEHYDROQUINATE SYNTHASE
CAI8012441.1AROM/DEHYDROQUINATE SYNTHASE
CAI8012442.1AROM/DEHYDROQUINATE SYNTHASE
CAI8012443.1MAGNESIUM-CHELATASE SUBUNIT CHLI
CAI8012445.1THIAMINE-PHOSPHATE PYROPHOSPHORYLASE
CAI8012444.1THIAMINE-PHOSPHATE PYROPHOSPHORYLASE
CAI8012446.1DNA POLYMERASE I
CAI8012447.1LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED
CAI8012448.1DIHYDRONEOPTERIN ALDOLASE 1-RELATED
CAI8012449.1DIHYDRONEOPTERIN ALDOLASE 1-RELATED
CAI8012450.1TRANSPORT ATP-BINDING PROTEIN
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