Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035121.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8035122.1 | |
| CAI8035123.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8035124.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8035125.1 | |
| CAI8035126.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8035127.1 | METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED |
| CAI8035128.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8035129.1 | |
| CAI8035130.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8035133.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8035134.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8035132.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8035131.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8035135.1 | |
| CAI8035138.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
| CAI8035137.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
| CAI8035136.1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
| CAI8035139.1 | |
| CAI8035142.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 21 |
| CAI8035141.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 21 |
| CAI8035140.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 21 |
| CAI8035143.1 | DULLARD PROTEIN PHOSPHATASE |
| CAI8035144.1 | DULLARD PROTEIN PHOSPHATASE |
| CAI8035145.1 | DULLARD PROTEIN PHOSPHATASE |
| CAI8035147.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8035148.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8035149.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8035151.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8035150.1 | FIBRILLIN-RELATED |
| CAI8035146.1 | FIBRILLIN-RELATED |
| CAI8035152.1 | |
| CAI8035153.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 161 |
| CAI8035154.1 | |
| CAI8035155.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8035156.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8035157.1 | |
| CAI8035158.1 | |
| CAI8035159.1 | SEGMENT POLARITY PROTEIN DISHEVELLED |
| CAI8035160.1 | SEGMENT POLARITY PROTEIN DISHEVELLED |
| CAI8035161.1 | |
| CAI8035162.1 | |
| CAI8035163.1 | ANKYRIN REPEAT CONTAINING |
| CAI8035164.1 | LD33804P |
| CAI8035170.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8035169.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8035168.1 | ATROPHIN-RELATED |
| CAI8035167.1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
| CAI8035166.1 | |
| CAI8035165.1 |
