Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035223.1 | |
| CAI8035222.1 | |
| CAI8035221.1 | |
| CAI8035224.1 | |
| CAI8035225.1 | |
| CAI8035226.1 | |
| CAI8035227.1 | |
| CAI8035228.1 | |
| CAI8035229.1 | EXOINULINASE INUD (AFU_ORTHOLOGUE AFUA_5G00480) |
| CAI8035231.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8035230.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8035232.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8035233.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8035234.1 | FO SYNTHASE (COFH) |
| CAI8035235.1 | FO SYNTHASE (COFH) |
| CAI8035236.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8035237.1 | CHLORINASE MJ1651 |
| CAI8035239.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8035238.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8035240.1 | |
| CAI8035241.1 | OS02G0815200 PROTEIN |
| CAI8035242.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8035243.1 | UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT |
| CAI8035244.1 | |
| CAI8035245.1 | |
| CAI8035246.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8035247.1 | |
| CAI8035248.1 | |
| CAI8035249.1 | |
| CAI8035250.1 | BLL7424 PROTEIN |
| CAI8035251.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8035252.1 | GLUTAREDOXIN-LIKE PROTEIN C5ORF63 HOMOLOG |
| CAI8035253.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8035254.1 | |
| CAI8035255.1 | GDP-MANNOSE MANNOSYL HYDROLASE |
| CAI8035256.1 | N-ACETYL-D-GLUCOSAMINE KINASE |
| CAI8035257.1 | GLUCOKINASE REGULATORY PROTEIN |
| CAI8035258.1 | GLUCOKINASE REGULATORY PROTEIN |
| CAI8035259.1 | GLUCOKINASE REGULATORY PROTEIN |
| CAI8035260.1 | |
| CAI8035261.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8035262.1 | ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT ALPHA |
| CAI8035263.1 | ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT ALPHA |
| CAI8035264.1 | TYPE I RESTRICTION ENZYME HINDVIIP M PROTEIN-RELATED |
| CAI8035266.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8035267.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8035265.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8035269.1 | |
| CAI8035268.1 | |
| CAI8035270.1 | ATP-DEPENDENT DNA HELICASE |
