Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035321.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8035322.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8035331.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035329.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035330.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035332.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035333.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035326.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035325.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035327.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035328.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035323.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035324.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8035334.1 | |
| CAI8035335.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8035339.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8035340.1 | |
| CAI8035338.1 | |
| CAI8035341.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8035337.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8035336.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| CAI8035342.1 | |
| CAI8035343.1 | |
| CAI8035344.1 | |
| CAI8035345.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| CAI8035347.1 | |
| CAI8035346.1 | |
| CAI8035348.1 | |
| CAI8035349.1 | |
| CAI8035350.1 | |
| CAI8035351.1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
| CAI8035352.1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
| CAI8035353.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8035354.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8035355.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8035356.1 | ALPHA-L-FUCOSIDASE |
| CAI8035358.1 | FI04487P |
| CAI8035357.1 | FI04487P |
| CAI8035359.1 | FI04487P |
| CAI8035364.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035363.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035362.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035361.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035360.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035365.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035366.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035368.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035367.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035369.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| CAI8035370.1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
