Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035422.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035421.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035420.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035424.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035427.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035426.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035425.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035428.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035429.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035430.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| CAI8035432.1 | |
| CAI8035431.1 | |
| CAI8035433.1 | |
| CAI8035434.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| CAI8035436.1 | |
| CAI8035435.1 | |
| CAI8035440.1 | |
| CAI8035439.1 | |
| CAI8035438.1 | |
| CAI8035437.1 | |
| CAI8035441.1 | |
| CAI8035445.1 | |
| CAI8035444.1 | |
| CAI8035443.1 | |
| CAI8035442.1 | |
| CAI8035446.1 | |
| CAI8035447.1 | |
| CAI8035448.1 | |
| CAI8035449.1 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
| CAI8035451.1 | |
| CAI8035450.1 | EXPRESSED PROTEIN |
| CAI8035452.1 | EXONUCLEASE V |
| CAI8035453.1 | |
| CAI8035454.1 | DUF4291 DOMAIN-CONTAINING PROTEIN |
| CAI8035455.1 | SUGAR KINASE |
| CAI8035456.1 | |
| CAI8035458.1 | MEVALONATE KINASE |
| CAI8035457.1 | MEVALONATE KINASE |
| CAI8035460.1 | PEPTIDYL-TRNA HYDROLASE 2 |
| CAI8035459.1 | PEPTIDYL-TRNA HYDROLASE 2 |
| CAI8035461.1 | CELL CYCLE CHECKPOINT PROTEIN RAD1 |
| CAI8035462.1 | UNCHARACTERIZED |
| CAI8035463.1 | |
| CAI8035464.1 | |
| CAI8035465.1 | |
| CAI8035466.1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
| CAI8035467.1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
| CAI8035468.1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
| CAI8035469.1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
| CAI8035470.1 |
