Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035271.1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| CAI8035272.1 | KINESIN LIGHT CHAIN |
| CAI8035273.1 | |
| CAI8035274.1 | |
| CAI8035278.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8035277.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8035275.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8035276.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8035280.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8035279.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8035281.1 | COLD SHOCK DOMAIN CONTAINING PROTEINS |
| CAI8035283.1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
| CAI8035282.1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
| CAI8035284.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8035285.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8035286.1 | C. ELEGANS HOMEOBOX |
| CAI8035287.1 | |
| CAI8035288.1 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
| CAI8035289.1 | |
| CAI8035290.1 | ABC TRANSPORTER I FAMILY MEMBER 10 |
| CAI8035291.1 | ABC TRANSPORTER I FAMILY MEMBER 10 |
| CAI8035292.1 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| CAI8035293.1 | TRANSKETOLASE |
| CAI8035294.1 | TRANSKETOLASE |
| CAI8035295.1 | TRANSKETOLASE |
| CAI8035296.1 | TRANSKETOLASE |
| CAI8035297.1 | |
| CAI8035298.1 | LIPOPROTEIN-RELATED |
| CAI8035299.1 | |
| CAI8035300.1 | |
| CAI8035302.1 | |
| CAI8035301.1 | |
| CAI8035303.1 | |
| CAI8035304.1 | |
| CAI8035305.1 | |
| CAI8035309.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8035308.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8035307.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8035310.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8035311.1 | VESICULAR-FUSION PROTEIN NSF |
| CAI8035306.1 | |
| CAI8035312.1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
| CAI8035313.1 | |
| CAI8035314.1 | TRANS-ACONITATE 2-METHYLTRANSFERASE-RELATED |
| CAI8035315.1 | |
| CAI8035316.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8035317.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8035318.1 | ARYLACETAMIDE DEACETYLASE |
| CAI8035319.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8035320.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
