Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035071.1 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL |
| CAI8035072.1 | MONOCARBOXYLATE TRANSPORTER |
| CAI8035073.1 | |
| CAI8035074.1 | 3-KETODIHYDROSPHINGOSINE REDUCTASE |
| CAI8035075.1 | EPOXIDE HYDROLASE 1-RELATED |
| CAI8035076.1 | SULFITE REDUCTASE |
| CAI8035077.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8035079.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8035078.1 | SI:CH211-266K2.1 |
| CAI8035080.1 | |
| CAI8035081.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8035082.1 | |
| CAI8035083.1 | |
| CAI8035084.1 | UNCHARACTERIZED |
| CAI8035085.1 | TRANSMEMBRANE PROTEIN YFCA |
| CAI8035086.1 | |
| CAI8035087.1 | |
| CAI8035088.1 | UDP-N-ACETYL-2-AMINO-2-DEOXY-D-GLUCURONATE OXIDASE |
| CAI8035089.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8035090.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8035091.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8035092.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8035093.1 | |
| CAI8035094.1 | IDURONATE 2-SULFATASE |
| CAI8035095.1 | AMINOTRANSFERASE |
| CAI8035096.1 | L-AMINO ACID N-ACETYLTRANSFERASE |
| CAI8035097.1 | |
| CAI8035098.1 | RIBONUCLEASE P PROTEIN COMPONENT |
| CAI8035099.1 | OXA1 |
| CAI8035100.1 | TRNA MODIFICATION GTPASE GTPBP3 |
| CAI8035101.1 | |
| CAI8035103.1 | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED |
| CAI8035102.1 | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED |
| CAI8035104.1 | PYRIDOXINE 5'-PHOSPHATE SYNTHASE |
| CAI8035105.1 | GLUTAMATE DEHYDROGENASE |
| CAI8035106.1 | |
| CAI8035107.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8035108.1 | D-LACTATE DEHYDROGENASE |
| CAI8035109.1 | IDURONATE 2-SULFATASE |
| CAI8035110.1 | |
| CAI8035111.1 | |
| CAI8035112.1 | |
| CAI8035113.1 | |
| CAI8035114.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI8035115.1 | SORBITOL DEHYDROGENASE |
| CAI8035116.1 | |
| CAI8035117.1 | |
| CAI8035118.1 | UNCHARACTERIZED |
| CAI8035119.1 | TRANSAMIDASE |
| CAI8035120.1 | TRANSCRIPTIONAL REGULATOR, MARR FAMILY |
