Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035771.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8035772.1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| CAI8035773.1 | METALLOPROTEASE M41 FTSH |
| CAI8035775.1 | METALLOPROTEASE M41 FTSH |
| CAI8035774.1 | METALLOPROTEASE M41 FTSH |
| CAI8035780.1 | METALLOPROTEASE M41 FTSH |
| CAI8035777.1 | METALLOPROTEASE M41 FTSH |
| CAI8035776.1 | METALLOPROTEASE M41 FTSH |
| CAI8035779.1 | METALLOPROTEASE M41 FTSH |
| CAI8035778.1 | METALLOPROTEASE M41 FTSH |
| CAI8035781.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8035782.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8035783.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8035784.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8035785.1 | MICROSOMAL DIPEPTIDASE |
| CAI8035786.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8035787.1 | IDURONATE 2-SULFATASE |
| CAI8035788.1 | PHYTANOYL-COA DIOXYGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_2G03330) |
| CAI8035789.1 | |
| CAI8035790.1 | |
| CAI8035791.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8035792.1 | ALPHA-IPM SYNTHASE/HOMOCITRATE SYNTHASE |
| CAI8035793.1 | |
| CAI8035794.1 | EXSB FAMILY PROTEIN |
| CAI8035796.1 | PEPTIDE DEFORMYLASE |
| CAI8035795.1 | PEPTIDE DEFORMYLASE |
| CAI8035797.1 | |
| CAI8035798.1 | |
| CAI8035799.1 | |
| CAI8035800.1 | BNR/ASP-BOX REPEAT FAMILY PROTEIN |
| CAI8035801.1 | |
| CAI8035802.1 | |
| CAI8035803.1 | BLL4140 PROTEIN |
| CAI8035804.1 | |
| CAI8035805.1 | |
| CAI8035806.1 | |
| CAI8035807.1 | |
| CAI8035808.1 | |
| CAI8035809.1 | |
| CAI8035810.1 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 |
| CAI8035811.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI8035812.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8035816.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8035815.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8035814.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8035813.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8035817.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8035818.1 | |
| CAI8035819.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8035820.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
