Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035821.1 | |
| CAI8035822.1 | |
| CAI8035823.1 | |
| CAI8035824.1 | |
| CAI8035825.1 | DNA PRIMASE |
| CAI8035826.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8035828.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8035827.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8035829.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8035830.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8035831.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8035832.1 | ENDONUCLEASE V |
| CAI8035833.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035834.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035835.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035836.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035837.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035838.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035839.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8035840.1 | |
| CAI8035844.1 | THREONINE-TRNA LIGASE |
| CAI8035843.1 | THREONINE-TRNA LIGASE |
| CAI8035842.1 | THREONINE-TRNA LIGASE |
| CAI8035841.1 | THREONINE-TRNA LIGASE |
| CAI8035845.1 | RIBONUCLEASE H1 |
| CAI8035846.1 | RIBONUCLEASE H1 |
| CAI8035849.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8035847.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8035848.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8035850.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8035851.1 | CYTOCHROME C OXIDASE, SUBUNIT II |
| CAI8035852.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8035853.1 | CYTOCHROME C OXIDASE SUBUNIT III |
| CAI8035854.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8035855.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8035856.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8035858.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8035857.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8035859.1 | |
| CAI8035860.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8035862.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8035861.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8035863.1 | RNA-SPLICING LIGASE RTCB |
| CAI8035864.1 | RNA-SPLICING LIGASE RTCB |
| CAI8035866.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8035865.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI8035869.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8035868.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8035867.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI8035870.1 | PHOSPHATE TRANSPORT SYSTEM PERMEASE PROTEIN PSTA-RELATED |
