Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8035670.1 | |
| CAI8035672.1 | |
| CAI8035673.1 | |
| CAI8035674.1 | |
| CAI8035675.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8035676.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8035677.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8035678.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8035679.1 | NADP-DEPENDENT MALIC ENZYME |
| CAI8035680.1 | |
| CAI8035681.1 | |
| CAI8035682.1 | |
| CAI8035683.1 | TRANSPOSON |
| CAI8035684.1 | OTU DOMAIN CONTAINING PROTEIN |
| CAI8035685.1 | OTU DOMAIN CONTAINING PROTEIN |
| CAI8035687.1 | |
| CAI8035686.1 | |
| CAI8035688.1 | |
| CAI8035689.1 | |
| CAI8035690.1 | |
| CAI8035691.1 | |
| CAI8035692.1 | |
| CAI8035693.1 | |
| CAI8035694.1 | |
| CAI8035696.1 | |
| CAI8035695.1 | |
| CAI8035697.1 | |
| CAI8035698.1 | TRANSAMIDASE |
| CAI8035699.1 | ACYL-COA DESATURASE |
| CAI8035700.1 | REGULATOR OF RPOS |
| CAI8035701.1 | BETA-LACTAMASE-RELATED |
| CAI8035702.1 | MCG48959-RELATED |
| CAI8035703.1 | MCG48959-RELATED |
| CAI8035704.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8035705.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8035706.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8035707.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI8035708.1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT |
| CAI8035709.1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| CAI8035710.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI8035711.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8035712.1 | NADH DEHYDROGENASE SUBUNIT 1 |
| CAI8035713.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 |
| CAI8035714.1 | NADH DEHYDROGENASE |
| CAI8035715.1 | ATP SYNTHASE DELTA CHAIN |
| CAI8035716.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8035717.1 | ATP SYNTHASE GAMMA CHAIN |
| CAI8035718.1 | |
| CAI8035719.1 | ATP SYNTHASE |
| CAI8035720.1 | ATP SYNTHASE |
