Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036271.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036274.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036273.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036272.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036276.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8036275.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8036277.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8036278.1 | |
| CAI8036279.1 | |
| CAI8036280.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036281.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036282.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8036285.1 | |
| CAI8036286.1 | |
| CAI8036284.1 | |
| CAI8036283.1 | |
| CAI8036287.1 | |
| CAI8036288.1 | |
| CAI8036289.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8036295.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8036293.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8036291.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8036292.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8036294.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8036290.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8036296.1 | GLYCEROL DEHYDROGENASE |
| CAI8036297.1 | GTP CYCLOHYDROLASE I |
| CAI8036298.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8036299.1 | |
| CAI8036300.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8036301.1 | RNA METHYLASE-RELATED |
| CAI8036303.1 | RNA METHYLASE-RELATED |
| CAI8036302.1 | RNA METHYLASE-RELATED |
| CAI8036304.1 | UNCHARACTERIZED |
| CAI8036305.1 | |
| CAI8036310.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036308.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036311.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036309.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036307.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036306.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036312.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036313.1 | INTEGRATOR COMPLEX SUBUNIT 9 |
| CAI8036314.1 | ELONGATION FACTOR TS |
| CAI8036319.1 | PHD FINGER PROTEIN 20-RELATED |
| CAI8036318.1 | PHD FINGER PROTEIN 20-RELATED |
| CAI8036317.1 | PHD FINGER PROTEIN 20-RELATED |
| CAI8036316.1 | PHD FINGER PROTEIN 20-RELATED |
| CAI8036315.1 | PHD FINGER PROTEIN 20-RELATED |
| CAI8036320.1 | PHD FINGER PROTEIN 20-RELATED |
