Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036371.1 | |
| CAI8036373.1 | CBP/P300-RELATED |
| CAI8036372.1 | CBP/P300-RELATED |
| CAI8036374.1 | CBP/P300-RELATED |
| CAI8036375.1 | CBP/P300-RELATED |
| CAI8036378.1 | |
| CAI8036376.1 | |
| CAI8036377.1 | |
| CAI8036382.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8036381.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8036380.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8036379.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8036383.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8036385.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8036384.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| CAI8036386.1 | |
| CAI8036387.1 | |
| CAI8036389.1 | - |
| CAI8036388.1 | - |
| CAI8036390.1 | - |
| CAI8036391.1 | - |
| CAI8036392.1 | - |
| CAI8036395.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
| CAI8036393.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
| CAI8036394.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
| CAI8036396.1 | |
| CAI8036399.1 | ADHESION G-PROTEIN COUPLED RECEPTOR V1 |
| CAI8036398.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036397.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036400.1 | |
| CAI8036401.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036402.1 | |
| CAI8036403.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8036404.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8036405.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8036406.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8036407.1 | |
| CAI8036408.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8036409.1 | MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE |
| CAI8036410.1 | AMINOTRANSFERASE CLASS V |
| CAI8036411.1 | |
| CAI8036412.1 | |
| CAI8036413.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8036414.1 | |
| CAI8036415.1 | |
| CAI8036416.1 | |
| CAI8036417.1 | |
| CAI8036418.1 | |
| CAI8036420.1 | |
| CAI8036419.1 |
