Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036721.1 | RIBOSOMAL PROTEIN L17 |
| CAI8036722.1 | |
| CAI8036723.1 | RIBONUCLEASE Y |
| CAI8036724.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8036725.1 | XANTHINE DEHYDROGENASE |
| CAI8036726.1 | XANTHINE DEHYDROGENASE |
| CAI8036727.1 | |
| CAI8036728.1 | - |
| CAI8036729.1 | FE(2+)/MN(2+) TRANSPORTER PCL1 |
| CAI8036730.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8036731.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8036732.1 | |
| CAI8036733.1 | |
| CAI8036734.1 | ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 41, MITOCHONDRIAL |
| CAI8036735.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8036736.1 | LIPOPROTEIN-RELATED |
| CAI8036737.1 | |
| CAI8036738.1 | CYTOPLASMIC PROTEIN-RELATED |
| CAI8036739.1 | |
| CAI8036740.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8036741.1 | |
| CAI8036742.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8036743.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8036744.1 | YNAI-RELATED MECHANOSENSITIVE ION CHANNEL |
| CAI8036745.1 | ALCOHOL DEHYDROGENASE |
| CAI8036746.1 | ACYL-COA SYNTHETASE |
| CAI8036747.1 | |
| CAI8036748.1 | |
| CAI8036749.1 | MALATE SYNTHASE |
| CAI8036750.1 | MALATE SYNTHASE |
| CAI8036751.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8036752.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8036753.1 | MOXR FAMILY PROTEIN |
| CAI8036754.1 | MOXR FAMILY PROTEIN |
| CAI8036755.1 | MOXR FAMILY PROTEIN |
| CAI8036757.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8036756.1 | |
| CAI8036758.1 | |
| CAI8036759.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8036760.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8036761.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8036762.1 | COA BINDING DOMAIN CONTAINING PROTEIN |
| CAI8036763.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI8036764.1 | PROTEIN SMF |
| CAI8036765.1 | PROTEIN SMF |
| CAI8036766.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8036767.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8036768.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8036769.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8036778.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
