Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036871.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8036872.1 | FO SYNTHASE (COFH) |
| CAI8036873.1 | |
| CAI8036874.1 | ARYLSULFATASE K |
| CAI8036875.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D |
| CAI8036876.1 | |
| CAI8036877.1 | |
| CAI8036878.1 | |
| CAI8036879.1 | |
| CAI8036880.1 | |
| CAI8036881.1 | |
| CAI8036882.1 | |
| CAI8036883.1 | |
| CAI8036884.1 | |
| CAI8036887.1 | SEMAPHORIN |
| CAI8036888.1 | SEMAPHORIN |
| CAI8036886.1 | SEMAPHORIN |
| CAI8036885.1 | SEMAPHORIN |
| CAI8036889.1 | |
| CAI8036894.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI8036893.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI8036892.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI8036891.1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| CAI8036890.1 | |
| CAI8036895.1 | ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1 |
| CAI8036897.1 | JITTERBUG, ISOFORM N |
| CAI8036896.1 | JITTERBUG, ISOFORM N |
| CAI8036899.1 | DRAB11-RELATED |
| CAI8036898.1 | DRAB11-RELATED |
| CAI8036902.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8036900.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8036901.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8036903.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8036904.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8036906.1 | |
| CAI8036905.1 | |
| CAI8036907.1 | |
| CAI8036908.1 | |
| CAI8036909.1 | |
| CAI8036913.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8036912.1 | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT |
| CAI8036911.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8036910.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8036914.1 | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT |
| CAI8036915.1 | OS02G0815200 PROTEIN |
| CAI8036916.1 | RNA BINDING PROTEIN |
| CAI8036917.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI8036918.1 | |
| CAI8036920.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8036921.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
