Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037071.1 | NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN |
| CAI8037072.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8037077.1 | LUPUS LA PROTEIN-RELATED |
| CAI8037076.1 | LUPUS LA PROTEIN-RELATED |
| CAI8037074.1 | LUPUS LA PROTEIN-RELATED |
| CAI8037073.1 | |
| CAI8037075.1 | |
| CAI8037078.1 | |
| CAI8037079.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8037080.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8037081.1 | FANCONI ANEMIA GROUP F PROTEIN FANCF |
| CAI8037083.1 | FANCONI ANEMIA GROUP F PROTEIN FANCF |
| CAI8037082.1 | |
| CAI8037084.1 | RAD54-LIKE |
| CAI8037085.1 | CALRETICULIN AND CALNEXIN |
| CAI8037086.1 | |
| CAI8037087.1 | |
| CAI8037089.1 | WD-REPEAT PROTEIN-RELATED |
| CAI8037088.1 | WD-REPEAT PROTEIN-RELATED |
| CAI8037090.1 | WD-REPEAT PROTEIN-RELATED |
| CAI8037093.1 | WD-REPEAT PROTEIN-RELATED |
| CAI8037092.1 | WD-REPEAT PROTEIN-RELATED |
| CAI8037091.1 | WD-REPEAT PROTEIN-RELATED |
| CAI8037094.1 | |
| CAI8037095.1 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED |
| CAI8037096.1 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED |
| CAI8037097.1 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED |
| CAI8037098.1 | PROTEIN DIAPHANOUS |
| CAI8037099.1 | |
| CAI8037100.1 | |
| CAI8037101.1 | UNCHARACTERIZED |
| CAI8037102.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8037103.1 | PROTEIN SGT1 HOMOLOG |
| CAI8037104.1 | FIP1-LIKE 1 PROTEIN |
| CAI8037105.1 | RCG42593, ISOFORM CRA_A |
| CAI8037106.1 | |
| CAI8037107.1 | ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER |
| CAI8037108.1 | |
| CAI8037109.1 | |
| CAI8037110.1 | CADHERIN-87A |
| CAI8037111.1 | |
| CAI8037113.1 | |
| CAI8037112.1 | |
| CAI8037114.1 | |
| CAI8037115.1 | |
| CAI8037116.1 | |
| CAI8037117.1 | |
| CAI8037118.1 | CADHERIN-23 |
| CAI8037119.1 | |
| CAI8037120.1 |
