Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037121.1 | L-ASPARAGINASE |
| CAI8037122.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8037123.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8037124.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8037125.1 | |
| CAI8037126.1 | |
| CAI8037127.1 | |
| CAI8037129.1 | |
| CAI8037128.1 | |
| CAI8037130.1 | |
| CAI8037131.1 | |
| CAI8037133.1 | |
| CAI8037132.1 | |
| CAI8037134.1 | |
| CAI8037135.1 | |
| CAI8037136.1 | |
| CAI8037138.1 | |
| CAI8037137.1 | |
| CAI8037139.1 | |
| CAI8037140.1 | |
| CAI8037141.1 | |
| CAI8037143.1 | |
| CAI8037142.1 | |
| CAI8037144.1 | WU:FJ29H11 |
| CAI8037145.1 | WU:FJ29H11 |
| CAI8037146.1 | |
| CAI8037147.1 | |
| CAI8037148.1 | |
| CAI8037149.1 | |
| CAI8037150.1 | |
| CAI8037151.1 | 3'-5' EXORIBONUCLEASE CSL4-RELATED |
| CAI8037152.1 | BETA LACTAMASE DOMAIN |
| CAI8037153.1 | TRANSMEMBRANE PROTEIN 79 |
| CAI8037154.1 | GLUTAREDOXIN FAMILY MEMBER |
| CAI8037155.1 | TRANSMEMBRANE PROTEIN 79 |
| CAI8037157.1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| CAI8037156.1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| CAI8037158.1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| CAI8037159.1 | |
| CAI8037162.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8037161.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8037160.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8037163.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8037164.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8037165.1 | E3 UBIQUITIN-PROTEIN LIGASE MYCBP2 |
| CAI8037166.1 | |
| CAI8037167.1 | |
| CAI8037168.1 | |
| CAI8037169.1 | |
| CAI8037171.1 |
