Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037170.1 | |
| CAI8037174.1 | |
| CAI8037173.1 | |
| CAI8037172.1 | |
| CAI8037175.1 | |
| CAI8037176.1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| CAI8037178.1 | |
| CAI8037177.1 | |
| CAI8037179.1 | |
| CAI8037181.1 | |
| CAI8037180.1 | |
| CAI8037182.1 | |
| CAI8037183.1 | |
| CAI8037185.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037184.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037186.1 | |
| CAI8037187.1 | |
| CAI8037190.1 | PROTEIN SIDEKICK |
| CAI8037189.1 | PROTEIN SIDEKICK |
| CAI8037188.1 | PROTEIN SIDEKICK |
| CAI8037191.1 | PROTEIN SIDEKICK |
| CAI8037192.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8037193.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8037194.1 | SPERMIDINE/SPERMINE SYNTHASE |
| CAI8037195.1 | SPERMIDINE/SPERMINE SYNTHASE |
| CAI8037196.1 | UNCHARACTERIZED |
| CAI8037197.1 | UNCHARACTERIZED |
| CAI8037198.1 | UNCHARACTERIZED |
| CAI8037199.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8037200.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8037201.1 | |
| CAI8037202.1 | |
| CAI8037207.1 | UNCHARACTERIZED |
| CAI8037206.1 | UNCHARACTERIZED |
| CAI8037205.1 | UNCHARACTERIZED |
| CAI8037204.1 | UNCHARACTERIZED |
| CAI8037208.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8037209.1 | |
| CAI8037203.1 | |
| CAI8037210.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8037211.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8037212.1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| CAI8037216.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037217.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037215.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037214.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037213.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037218.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037220.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037219.1 | DNA-DIRECTED RNA POLYMERASE |
