Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037321.1 | |
| CAI8037322.1 | |
| CAI8037324.1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
| CAI8037323.1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
| CAI8037325.1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| CAI8037326.1 | |
| CAI8037327.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI8037330.1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
| CAI8037329.1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
| CAI8037328.1 | GLYCOGEN SYNTHASE KINASE-3 ALPHA |
| CAI8037331.1 | |
| CAI8037332.1 | DNA LIGASE 4 |
| CAI8037333.1 | DNA LIGASE 4 |
| CAI8037336.1 | CENTLEIN |
| CAI8037335.1 | CENTLEIN |
| CAI8037334.1 | CENTLEIN |
| CAI8037337.1 | CENTLEIN |
| CAI8037338.1 | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER |
| CAI8037339.1 | |
| CAI8037343.1 | MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G |
| CAI8037342.1 | MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G |
| CAI8037341.1 | MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G |
| CAI8037340.1 | |
| CAI8037344.1 | |
| CAI8037346.1 | CDNA SEQUENCE BC021608 |
| CAI8037345.1 | CDNA SEQUENCE BC021608 |
| CAI8037348.1 | |
| CAI8037347.1 | - |
| CAI8037349.1 | |
| CAI8037350.1 | |
| CAI8037351.1 | |
| CAI8037352.1 | |
| CAI8037353.1 | |
| CAI8037354.1 | |
| CAI8037355.1 | |
| CAI8037357.1 | TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAE |
| CAI8037356.1 | TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAE |
| CAI8037358.1 | THIAMINE-MONOPHOSPHATE KINASE |
| CAI8037359.1 | |
| CAI8037360.1 | TRANSAMIDASE |
| CAI8037361.1 | TRANSAMIDASE |
| CAI8037362.1 | BLL0334 PROTEIN |
| CAI8037363.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8037364.1 | |
| CAI8037365.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8037366.1 | TUDOR DOMAIN-CONTAINING PROTEIN |
| CAI8037367.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8037368.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8037369.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8037370.1 | IKB KINASE |
