About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8037472.1ATP-DEPENDENT RNA HELICASE
CAI8037471.1ATP-DEPENDENT RNA HELICASE
CAI8037473.1ATP-DEPENDENT RNA HELICASE
CAI8037474.1
CAI8037475.1DOCKING PROTEIN RELATED
CAI8037476.1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
CAI8037477.1UBIQUITIN-CONJUGATING ENZYME E2
CAI8037478.1
CAI8037479.1RAB FAMILY
CAI8037480.1
CAI8037481.1
CAI8037482.1
CAI8037484.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8037483.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8037485.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8037486.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8037487.1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
CAI8037488.1
CAI8037489.1
CAI8037490.1
CAI8037491.1
CAI8037492.1MUCIN 4-RELATED
CAI8037497.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8037496.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8037494.1
CAI8037493.1
CAI8037495.1
CAI8037498.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8037501.1CYTOKINE RECEPTOR
CAI8037500.1TENASCIN
CAI8037499.1
CAI8037502.1CYTOKINE RECEPTOR
CAI8037504.1BONUS, ISOFORM C-RELATED
CAI8037503.1
CAI8037505.1PSEUDOURIDYLATE SYNTHASE
CAI8037506.1
CAI8037507.1MOXR FAMILY PROTEIN
CAI8037508.12-METHYLCITRATE DEHYDRATASE-RELATED
CAI8037509.12-METHYLCITRATE DEHYDRATASE-RELATED
CAI8037511.1EPOXIDE HYDROLASE
CAI8037510.1EPOXIDE HYDROLASE
CAI8037512.1PHOSPHOTRIESTERASE-RELATED
CAI8037513.1GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
CAI8037514.1GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
CAI8037515.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
CAI8037516.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
CAI8037517.1
CAI8037518.1
CAI8037519.1
CAI8037520.1
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