Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037521.1 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| CAI8037522.1 | |
| CAI8037523.1 | |
| CAI8037524.1 | |
| CAI8037525.1 | REGULATOR OF RPOS |
| CAI8037526.1 | SENSOR HISTIDINE KINASE CPXA |
| CAI8037527.1 | |
| CAI8037528.1 | |
| CAI8037533.1 | METALLOPROTEASE M41 FTSH |
| CAI8037532.1 | METALLOPROTEASE M41 FTSH |
| CAI8037531.1 | METALLOPROTEASE M41 FTSH |
| CAI8037530.1 | METALLOPROTEASE M41 FTSH |
| CAI8037529.1 | METALLOPROTEASE M41 FTSH |
| CAI8037534.1 | TRNA(ILE)-LYSIDINE SYNTHASE-RELATED |
| CAI8037535.1 | |
| CAI8037536.1 | PROTEIN TOLB HOMOLOG |
| CAI8037537.1 | EXBD MEMBRANE COMPONENT OF PMF-DRIVEN MACROMOLECULE IMPORT SYSTEM |
| CAI8037539.1 | PROTEIN TOLQ |
| CAI8037538.1 | PROTEIN TOLQ |
| CAI8037540.1 | |
| CAI8037549.1 | - |
| CAI8037548.1 | - |
| CAI8037547.1 | - |
| CAI8037546.1 | - |
| CAI8037545.1 | - |
| CAI8037544.1 | - |
| CAI8037543.1 | - |
| CAI8037542.1 | - |
| CAI8037541.1 | - |
| CAI8037550.1 | RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATED |
| CAI8037551.1 | PHENAZINE BIOSYNTHESIS PROTEIN |
| CAI8037552.1 | - |
| CAI8037553.1 | - |
| CAI8037554.1 | 2-PHOSPHO-L-LACTATE TRANSFERASE |
| CAI8037555.1 | 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE PHOSPHATE SYNTHASE THI11-RELATED |
| CAI8037556.1 | ALKANE SULFONATE ABC TRANSPORTER-RELATED, MEMBRANE SUBUNIT |
| CAI8037557.1 | DNA REPAIR PROTEIN RECO |
| CAI8037558.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8037559.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8037560.1 | |
| CAI8037561.1 | DETHIOBIOTIN SYNTHETASE |
| CAI8037563.1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
| CAI8037562.1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
| CAI8037564.1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
| CAI8037565.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8037567.1 | UNCHARACTERIZED PROTEIN YBGL-RELATED |
| CAI8037566.1 | UNCHARACTERIZED PROTEIN YBGL-RELATED |
| CAI8037568.1 | |
| CAI8037569.1 | |
| CAI8037570.1 |
