Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037671.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8037672.1 | RIBONUCLEASE Y |
| CAI8037673.1 | RIBONUCLEASE Y |
| CAI8037674.1 | RIBONUCLEASE Y |
| CAI8037675.1 | RIBONUCLEASE Y |
| CAI8037676.1 | RIBONUCLEASE Y |
| CAI8037677.1 | RIBONUCLEASE Y |
| CAI8037679.1 | RIBONUCLEASE Y |
| CAI8037678.1 | RIBONUCLEASE Y |
| CAI8037680.1 | RIBONUCLEASE Y |
| CAI8037681.1 | RIBONUCLEASE Y |
| CAI8037682.1 | RIBONUCLEASE Y |
| CAI8037684.1 | RIBONUCLEASE Y |
| CAI8037683.1 | RIBONUCLEASE Y |
| CAI8037687.1 | RIBONUCLEASE Y |
| CAI8037686.1 | RIBONUCLEASE Y |
| CAI8037685.1 | RIBONUCLEASE Y |
| CAI8037688.1 | RIBONUCLEASE Y |
| CAI8037689.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8037690.1 | CITRATE SYNTHASE |
| CAI8037691.1 | CITRATE SYNTHASE |
| CAI8037692.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8037693.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8037694.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8037695.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8037696.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8037697.1 | |
| CAI8037699.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8037698.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8037700.1 | RIBONUCLEASE J |
| CAI8037701.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8037702.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8037703.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI8037704.1 | VACUOLAR PROTEIN SORTING VPS16 |
| CAI8037705.1 | |
| CAI8037706.1 | |
| CAI8037707.1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN |
| CAI8037711.1 | DISCS LARGE |
| CAI8037712.1 | DISCS LARGE |
| CAI8037710.1 | DISCS LARGE |
| CAI8037709.1 | DISCS LARGE |
| CAI8037708.1 | DISCS LARGE |
| CAI8037713.1 | DISCS LARGE |
| CAI8037714.1 | DISCS LARGE |
| CAI8037715.1 | DISCS LARGE |
| CAI8037716.1 | DISCS LARGE |
| CAI8037717.1 | DISCS LARGE |
| CAI8037718.1 | DISCS LARGE |
| CAI8037719.1 | DISCS LARGE |
| CAI8037720.1 | DISCS LARGE |
