Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037721.1 | |
| CAI8037726.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037725.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037727.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037728.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037724.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037723.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037722.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037729.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8037730.1 | |
| CAI8037731.1 | |
| CAI8037732.1 | |
| CAI8037733.1 | CENTROSOME-ASSOCIATED PROTEIN 350 |
| CAI8037734.1 | |
| CAI8037735.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8037736.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 |
| CAI8037737.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 |
| CAI8037738.1 | NETRIN/LAMININ-RELATED |
| CAI8037739.1 | |
| CAI8037742.1 | FK506-BINDING PROTEIN 15 |
| CAI8037740.1 | |
| CAI8037741.1 | |
| CAI8037743.1 | FK506-BINDING PROTEIN 15 |
| CAI8037745.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8037744.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8037746.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8037747.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8037750.1 | GLOMULIN |
| CAI8037749.1 | GLOMULIN |
| CAI8037748.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8037752.1 | 60S RIBOSOMAL PROTEIN L28 |
| CAI8037751.1 | 60S RIBOSOMAL PROTEIN L28 |
| CAI8037753.1 | PALMITOYLTRANSFERASE ZDHHC16 |
| CAI8037754.1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
| CAI8037758.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8037756.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8037755.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8037757.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8037759.1 | GOLGIN SUBFAMILY A MEMBER-RELATED |
| CAI8037762.1 | DYNAMIN |
| CAI8037763.1 | DYNAMIN |
| CAI8037764.1 | DYNAMIN |
| CAI8037760.1 | DYNAMIN |
| CAI8037761.1 | DYNAMIN |
| CAI8037765.1 | DYNAMIN |
| CAI8037767.1 | G PATCH DOMAIN CONTAINING PROTEIN 3 |
| CAI8037766.1 | G PATCH DOMAIN CONTAINING PROTEIN 3 |
| CAI8037768.1 | G PATCH DOMAIN CONTAINING PROTEIN 3 |
| CAI8037769.1 | |
| CAI8037770.1 | POLYCOMB-LIKE TRANSCRIPTION FACTOR |
