Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037821.1 | |
| CAI8037824.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037825.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037823.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037822.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037826.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037827.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037828.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8037829.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8037833.1 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
| CAI8037832.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8037831.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8037830.1 | |
| CAI8037834.1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| CAI8037835.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8037836.1 | |
| CAI8037837.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8037844.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| CAI8037843.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| CAI8037842.1 | CRUMBS FAMILY MEMBER |
| CAI8037840.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8037841.1 | CRUMBS FAMILY MEMBER |
| CAI8037839.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8037838.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8037846.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8037847.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8037845.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| CAI8037848.1 | NOTCH LIGAND FAMILY MEMBER |
| CAI8037849.1 | |
| CAI8037853.1 | COPINE |
| CAI8037852.1 | COPINE |
| CAI8037851.1 | COPINE |
| CAI8037850.1 | COPINE |
| CAI8037854.1 | COPINE |
| CAI8037855.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI8037856.1 | |
| CAI8037864.1 | PROTEIN SIDEKICK |
| CAI8037866.1 | PROTEIN SIDEKICK |
| CAI8037865.1 | PROTEIN SIDEKICK |
| CAI8037862.1 | PROTEIN SIDEKICK |
| CAI8037860.1 | PROTEIN SIDEKICK |
| CAI8037861.1 | PROTEIN SIDEKICK |
| CAI8037858.1 | PROTEIN SIDEKICK |
| CAI8037863.1 | PROTEIN SIDEKICK |
| CAI8037859.1 | PROTEIN SIDEKICK |
| CAI8037857.1 | PROTEIN SIDEKICK |
| CAI8037867.1 | |
| CAI8037868.1 | |
| CAI8037869.1 | NEPHRIN |
| CAI8037873.1 | HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER |
