Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038021.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8038022.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8038024.1 | MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED |
| CAI8038020.1 | HUEL-CATION TRANSPORTER |
| CAI8038029.1 | OLIGOPHRENIN 1 |
| CAI8038028.1 | OLIGOPHRENIN 1 |
| CAI8038027.1 | OLIGOPHRENIN 1 |
| CAI8038026.1 | OLIGOPHRENIN 1 |
| CAI8038025.1 | OLIGOPHRENIN 1 |
| CAI8038030.1 | OLIGOPHRENIN 1 |
| CAI8038031.1 | OLIGOPHRENIN 1 |
| CAI8038032.1 | |
| CAI8038033.1 | |
| CAI8038034.1 | |
| CAI8038035.1 | |
| CAI8038036.1 | NUCLEAR PORE GLYCOPROTEIN P62-RELATED |
| CAI8038037.1 | |
| CAI8038038.1 | SPONDIN |
| CAI8038039.1 | |
| CAI8038043.1 | CARBOHYDRATE SULFOTRANSFERASE |
| CAI8038042.1 | |
| CAI8038041.1 | |
| CAI8038044.1 | CARBOHYDRATE SULFOTRANSFERASE |
| CAI8038045.1 | |
| CAI8038046.1 | CARBOHYDRATE SULFOTRANSFERASE |
| CAI8038040.1 | OPSIN |
| CAI8038051.1 | CENTROMERE PROTEIN E |
| CAI8038052.1 | CENTROMERE PROTEIN E |
| CAI8038050.1 | CENTROMERE PROTEIN E |
| CAI8038049.1 | CENTROMERE PROTEIN E |
| CAI8038048.1 | CENTROMERE PROTEIN E |
| CAI8038047.1 | CENTROMERE PROTEIN E |
| CAI8038054.1 | |
| CAI8038053.1 | |
| CAI8038056.1 | ALANYL-TRNA SYNTHETASE |
| CAI8038055.1 | ALANYL-TRNA SYNTHETASE |
| CAI8038057.1 | ALANYL-TRNA SYNTHETASE |
| CAI8038058.1 | ALANYL-TRNA SYNTHETASE |
| CAI8038059.1 | HYPOTHETICAL PROTEIN LOC100359752 |
| CAI8038060.1 | HYPOTHETICAL PROTEIN LOC100359752 |
| CAI8038061.1 | |
| CAI8038062.1 | PREFOLDIN SUBUNIT 4 |
| CAI8038063.1 | PREFOLDIN SUBUNIT 4 |
| CAI8038066.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8038065.1 | |
| CAI8038064.1 | |
| CAI8038068.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8038067.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8038070.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8038069.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
