Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038171.1 | |
| CAI8038172.1 | |
| CAI8038175.1 | |
| CAI8038174.1 | |
| CAI8038173.1 | |
| CAI8038176.1 | |
| CAI8038177.1 | |
| CAI8038179.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8038180.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8038178.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8038181.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8038182.1 | |
| CAI8038183.1 | |
| CAI8038184.1 | |
| CAI8038185.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8038186.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8038187.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 1 |
| CAI8038188.1 | |
| CAI8038190.1 | |
| CAI8038189.1 | |
| CAI8038191.1 | MOLTING PROTEIN MLT-4 |
| CAI8038192.1 | ANKYRIN REPEAT PROTEIN |
| CAI8038193.1 | |
| CAI8038194.1 | |
| CAI8038195.1 | |
| CAI8038196.1 | RNA METHYLASE-RELATED |
| CAI8038197.1 | |
| CAI8038198.1 | |
| CAI8038199.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8038200.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8038205.1 | |
| CAI8038204.1 | |
| CAI8038203.1 | INNER CENTROMERE PROTEIN |
| CAI8038202.1 | INNER CENTROMERE PROTEIN |
| CAI8038201.1 | INNER CENTROMERE PROTEIN |
| CAI8038207.1 | TROPOMODULIN |
| CAI8038208.1 | TROPOMODULIN |
| CAI8038206.1 | TROPOMODULIN |
| CAI8038210.1 | TROPOMODULIN |
| CAI8038209.1 | TROPOMODULIN |
| CAI8038211.1 | |
| CAI8038212.1 | |
| CAI8038214.1 | |
| CAI8038213.1 | |
| CAI8038215.1 | |
| CAI8038216.1 | |
| CAI8038217.1 | METHYLOSOME PROTEIN 50 |
| CAI8038219.1 | METHYLOSOME PROTEIN 50 |
| CAI8038218.1 | METHYLOSOME PROTEIN 50 |
| CAI8038220.1 | 50S RIBOSOMAL PROTEIN L21 |
