Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038271.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI8038272.1 | AMINOPEPTIDASE |
| CAI8038273.1 | BLL3975 PROTEIN |
| CAI8038274.1 | POLY(3-HYDROXYALKANOATE) POLYMERASE SUBUNIT PHAC |
| CAI8038275.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8038276.1 | RUBREDOXIN |
| CAI8038277.1 | RUBREDOXIN |
| CAI8038278.1 | 50S RIBOSOMAL PROTEIN L3 GLUTAMINE METHYLTRANSFERASE |
| CAI8038280.1 | |
| CAI8038279.1 | |
| CAI8038281.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8038285.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8038284.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8038283.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8038282.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8038289.1 | GEO12009P1 |
| CAI8038288.1 | GEO12009P1 |
| CAI8038287.1 | GEO12009P1 |
| CAI8038286.1 | GEO12009P1 |
| CAI8038290.1 | - |
| CAI8038291.1 | BIOTIN SYNTHASE |
| CAI8038292.1 | BIOTIN SYNTHASE |
| CAI8038293.1 | ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE |
| CAI8038294.1 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
| CAI8038295.1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA |
| CAI8038296.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8038297.1 | PRENYLTRANSFERASES |
| CAI8038298.1 | PRENYLTRANSFERASES |
| CAI8038299.1 | METHANETHIOL OXIDASE |
| CAI8038300.1 | EPOXIDE HYDROLASE |
| CAI8038302.1 | - |
| CAI8038301.1 | - |
| CAI8038303.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8038304.1 | PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTI |
| CAI8038305.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8038307.1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| CAI8038306.1 | CYTOSINE DEAMINASE FAMILY MEMBER |
| CAI8038308.1 | SHIKIMATE DEHYDROGENASE |
| CAI8038311.1 | GLUTATHIONE REDUCTASE |
| CAI8038310.1 | GLUTATHIONE REDUCTASE |
| CAI8038309.1 | GLUTATHIONE REDUCTASE |
| CAI8038312.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI8038313.1 | |
| CAI8038314.1 | |
| CAI8038315.1 | OBG GTPASE FAMILY |
| CAI8038317.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8038316.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8038319.1 | RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8038318.1 | RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8038321.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
