Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038371.1 | UNCHARACTERIZED PROTEIN YKGE |
| CAI8038372.1 | UNCHARACTERIZED PROTEIN YKGE |
| CAI8038373.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8038374.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8038375.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8038376.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8038377.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8038378.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8038379.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8038380.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8038381.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8038384.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8038385.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8038386.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8038383.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8038382.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8038387.1 | |
| CAI8038388.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8038389.1 | ATP SYNTHASE DELTA/EPSILON CHAIN |
| CAI8038390.1 | ATP SYNTHASE |
| CAI8038391.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8038393.1 | ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC |
| CAI8038392.1 | ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC |
| CAI8038394.1 | ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC |
| CAI8038395.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8038396.1 | EXTRACELLULAR TUNGSTATE BINDING PROTEIN |
| CAI8038397.1 | MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS ADAPTER PROTEIN-RELATED |
| CAI8038398.1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| CAI8038399.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI8038400.1 | ALCOHOL DEHYDROGENASE 1-RELATED |
| CAI8038401.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8038402.1 | AMINOMETHYLTRANSFERASE |
| CAI8038403.1 | GLUTATHIONE HYDROLASE |
| CAI8038404.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8038405.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8038406.1 | PHOSPHOSERINE AMINOTRANSFERASE |
| CAI8038407.1 | NITRILASE-RELATED |
| CAI8038409.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8038408.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8038410.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8038411.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8038412.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8038413.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8038414.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH |
| CAI8038415.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH |
| CAI8038416.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8038417.1 | ARGINASE/AGMATINASE |
| CAI8038419.1 | PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE |
| CAI8038418.1 | PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE |
| CAI8038420.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
