Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038071.1 | |
| CAI8038072.1 | |
| CAI8038073.1 | TYROSINE-PROTEIN KINASE |
| CAI8038074.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8038075.1 | TYROSINE-PROTEIN KINASE |
| CAI8038076.1 | |
| CAI8038078.1 | THROMBOSPONDIN |
| CAI8038077.1 | THROMBOSPONDIN |
| CAI8038079.1 | |
| CAI8038081.1 | |
| CAI8038080.1 | |
| CAI8038082.1 | |
| CAI8038083.1 | POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN |
| CAI8038084.1 | |
| CAI8038085.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8038086.1 | TRANSAMIDASE |
| CAI8038087.1 | |
| CAI8038090.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8038089.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8038088.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8038091.1 | |
| CAI8038092.1 | LIPOPROTEIN-RELATED |
| CAI8038093.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8038094.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8038096.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI8038095.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI8038097.1 | SUGAR FERMENTATION STIMULATION PROTEIN A |
| CAI8038098.1 | A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III |
| CAI8038099.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8038100.1 | NITRITE REDUCTASE (NADH) LARGE SUBUNIT |
| CAI8038101.1 | NITRITE REDUCTASE (NADH) LARGE SUBUNIT |
| CAI8038102.1 | UNCHARACTERIZED |
| CAI8038103.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8038104.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8038105.1 | |
| CAI8038106.1 | ZGC:162634 |
| CAI8038107.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8038108.1 | SSL8005 PROTEIN |
| CAI8038109.1 | GNAT FAMILY, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G00765)-RELATED-RELATED |
| CAI8038110.1 | LONG-CHAIN-ALCOHOL OXIDASE |
| CAI8038111.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8038112.1 | OS03G0844900 PROTEIN |
| CAI8038113.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI8038114.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8038115.1 | |
| CAI8038116.1 | |
| CAI8038118.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8038117.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8038119.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8038120.1 | ALCOHOL DEHYDROGENASE |
