Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038222.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038221.1 | |
| CAI8038223.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038224.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038225.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038226.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038227.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038228.1 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
| CAI8038229.1 | ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL |
| CAI8038230.1 | ACID PHOSPHATASE-RELATED |
| CAI8038231.1 | ACID PHOSPHATASE-RELATED |
| CAI8038232.1 | UNCHARACTERIZED |
| CAI8038233.1 | UNCHARACTERIZED |
| CAI8038236.1 | LD44813P |
| CAI8038235.1 | LD44813P |
| CAI8038234.1 | LD44813P |
| CAI8038237.1 | LD44813P |
| CAI8038240.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8038242.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8038241.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8038239.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8038238.1 | |
| CAI8038243.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8038244.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8038245.1 | |
| CAI8038249.1 | |
| CAI8038250.1 | |
| CAI8038247.1 | |
| CAI8038246.1 | |
| CAI8038248.1 | |
| CAI8038251.1 | |
| CAI8038252.1 | |
| CAI8038253.1 | ARGINASE/AGMATINASE |
| CAI8038254.1 | ARGINASE/AGMATINASE |
| CAI8038257.1 | ARGINASE/AGMATINASE |
| CAI8038256.1 | ARGINASE/AGMATINASE |
| CAI8038255.1 | ARGINASE/AGMATINASE |
| CAI8038258.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8038259.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8038261.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8038260.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8038262.1 | AMINOMETHYLTRANSFERASE |
| CAI8038263.1 | |
| CAI8038265.1 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
| CAI8038264.1 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
| CAI8038266.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8038267.1 | AMINOMETHYLTRANSFERASE |
| CAI8038268.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8038269.1 | TRANSCRIPTIONAL REGULATOR, GNTR FAMILY |
| CAI8038270.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
