Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038320.1 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| CAI8038322.1 | MALATE SYNTHASE G |
| CAI8038323.1 | MALATE SYNTHASE G |
| CAI8038324.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8038325.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8038326.1 | DIHYDROFOLATE REDUCTASE |
| CAI8038327.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8038328.1 | GLUTATHIONE S-TRANSFERASE-RELATED |
| CAI8038330.1 | AMINOPEPTIDASE |
| CAI8038329.1 | AMINOPEPTIDASE |
| CAI8038331.1 | UNCHARACTERIZED |
| CAI8038333.1 | PUROMYCIN-SENSITIVE AMINOPEPTIDASE |
| CAI8038332.1 | PUROMYCIN-SENSITIVE AMINOPEPTIDASE |
| CAI8038340.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038341.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038339.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038338.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038337.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038335.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038336.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038334.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8038342.1 | LEXA REPRESSOR |
| CAI8038346.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8038345.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8038344.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8038343.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8038347.1 | |
| CAI8038348.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8038349.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8038350.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8038351.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8038352.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8038353.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8038354.1 | GLUTAMINE SYNTHETASE |
| CAI8038355.1 | SULFUR CARRIER PROTEIN YEDF-RELATED |
| CAI8038356.1 | |
| CAI8038357.1 | GLYCYL-TRNA SYNTHETASE |
| CAI8038358.1 | GLYCYL-TRNA SYNTHETASE |
| CAI8038359.1 | GLYCYL-TRNA SYNTHETASE |
| CAI8038360.1 | GLYCYL-TRNA SYNTHETASE |
| CAI8038361.1 | GLYCYL-TRNA SYNTHETASE |
| CAI8038362.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8038365.1 | 4-HYDROXYTHREONINE-4-PHOSPHATE DEHYDROGENASE |
| CAI8038364.1 | 4-HYDROXYTHREONINE-4-PHOSPHATE DEHYDROGENASE |
| CAI8038363.1 | 4-HYDROXYTHREONINE-4-PHOSPHATE DEHYDROGENASE |
| CAI8038366.1 | |
| CAI8038367.1 | MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B |
| CAI8038368.1 | MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B |
| CAI8038370.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8038369.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
