Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038469.1 | |
| CAI8038472.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8038478.1 | SHC TRANSFORMING PROTEIN |
| CAI8038477.1 | SHC TRANSFORMING PROTEIN |
| CAI8038476.1 | SHC TRANSFORMING PROTEIN |
| CAI8038475.1 | HEAVYWEIGHT, ISOFORM A |
| CAI8038474.1 | |
| CAI8038473.1 | |
| CAI8038480.1 | HEAVYWEIGHT, ISOFORM A |
| CAI8038479.1 | |
| CAI8038481.1 | SHC TRANSFORMING PROTEIN |
| CAI8038482.1 | SHC TRANSFORMING PROTEIN |
| CAI8038483.1 | |
| CAI8038488.1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
| CAI8038487.1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
| CAI8038486.1 | |
| CAI8038485.1 | |
| CAI8038484.1 | |
| CAI8038490.1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
| CAI8038489.1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
| CAI8038491.1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
| CAI8038492.1 | 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 |
| CAI8038493.1 | 6-PHOSPHOGLUCONATE PHOSPHATASE |
| CAI8038494.1 | |
| CAI8038495.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8038496.1 | AMINOMETHYLTRANSFERASE |
| CAI8038497.1 | TYROSINE-PROTEIN PHOSPHATASE |
| CAI8038498.1 | |
| CAI8038499.1 | |
| CAI8038500.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMH |
| CAI8038501.1 | CYTOCHROME C ASSEMBLY PROTEIN-RELATED |
| CAI8038502.1 | |
| CAI8038503.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8038504.1 | |
| CAI8038505.1 | |
| CAI8038506.1 | SLR1429 PROTEIN |
| CAI8038507.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8038508.1 | |
| CAI8038509.1 | |
| CAI8038510.1 | |
| CAI8038512.1 | |
| CAI8038511.1 | CYTOKINE RECEPTOR |
| CAI8038513.1 | |
| CAI8038514.1 | |
| CAI8038515.1 | PRE-MRNA CLEAVAGE COMPLEX II |
| CAI8038516.1 | |
| CAI8038517.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8038518.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI8038521.1 | RED PROTEIN IK FACTOR CYTOKINE IK |
| CAI8038520.1 | RED PROTEIN IK FACTOR CYTOKINE IK |
