Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038616.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038621.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038625.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038623.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038624.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038626.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038631.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038627.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038629.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038628.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038630.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038632.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
| CAI8038633.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8038634.1 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
| CAI8038635.1 | |
| CAI8038636.1 | RADICAL SAM PROTEINS |
| CAI8038638.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8038639.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8038640.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8038637.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8038641.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8038643.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8038642.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8038644.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8038645.1 | MONOCARBOXYLATE TRANSPORTER |
| CAI8038646.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8038647.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8038648.1 | |
| CAI8038649.1 | |
| CAI8038650.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8038651.1 | |
| CAI8038652.1 | RIBD C-TERMINAL DOMAIN CONTAINING PROTEIN |
| CAI8038653.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI8038655.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8038654.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8038656.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8038657.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI8038658.1 | |
| CAI8038659.1 | |
| CAI8038660.1 | DNA-3-METHYLADENINE GLYCOSYLASE 1 |
| CAI8038661.1 | D-AMINOACYL-TRNA DEACYLASE |
| CAI8038662.1 | FLAVOHEMOPROTEIN |
| CAI8038663.1 | FES CLUSTER ASSEMBLY PROTEIN SUF |
| CAI8038664.1 | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC |
| CAI8038665.1 | ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC |
| CAI8038666.1 | PROTEIN ABCI7, CHLOROPLASTIC |
| CAI8038667.1 | CYSTEINE DESULFURASE |
| CAI8038668.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8038669.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
| CAI8038670.1 | FERRITIN |
