Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038718.1 | |
| CAI8038717.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038727.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038726.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038725.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038724.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038723.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038728.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038729.1 | |
| CAI8038730.1 | |
| CAI8038731.1 | |
| CAI8038732.1 | |
| CAI8038733.1 | TIS1421-TRANSPOSASE PROTEIN A |
| CAI8038734.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8038735.1 | TREHALASE |
| CAI8038736.1 | METHANETHIOL OXIDASE |
| CAI8038737.1 | TRANSMEMBRANE PROTEIN |
| CAI8038738.1 | PROTEIN JAG |
| CAI8038740.1 | CELL SURFACE PROTEIN |
| CAI8038739.1 | CELL SURFACE PROTEIN |
| CAI8038741.1 | MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED |
| CAI8038743.1 | RIBONUCLEASE P PROTEIN COMPONENT |
| CAI8038742.1 | RIBONUCLEASE P PROTEIN COMPONENT |
| CAI8038744.1 | |
| CAI8038745.1 | |
| CAI8038746.1 | AMINOTRANSFERASE CLASS V |
| CAI8038747.1 | |
| CAI8038748.1 | METALLOPROTEASE M41 FTSH |
| CAI8038749.1 | METALLOPROTEASE M41 FTSH |
| CAI8038750.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8038754.1 | RECA |
| CAI8038753.1 | RECA |
| CAI8038751.1 | RECA |
| CAI8038752.1 | RECA |
| CAI8038755.1 | ENDORIBONUCLEASE LACTB2 |
| CAI8038756.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8038757.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8038758.1 | 2-OXOGLUTARATE SYNTHASE SUBUNIT KORC |
| CAI8038759.1 | 2-OXOGLUTARATE OXIDOREDUCTASE SUBUNIT KORB-RELATED |
| CAI8038760.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI8038761.1 | |
| CAI8038762.1 | |
| CAI8038763.1 | |
| CAI8038764.1 | |
| CAI8038765.1 | |
| CAI8038766.1 | EPOXIDE HYDROLASE 1-RELATED |
| CAI8038767.1 | ACYL-COA DEHYDROGENASE |
| CAI8038768.1 | ACYL-COA DEHYDROGENASE |
| CAI8038769.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8038772.1 | DEP DOMAIN PROTEIN |
