Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038871.1 | |
| CAI8038874.1 | CYTOCHROME C1 |
| CAI8038875.1 | CYTOCHROME C1 |
| CAI8038872.1 | CORTACTIN AND DREBRIN |
| CAI8038873.1 | CYTOCHROME C1 |
| CAI8038880.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038881.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038879.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038878.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038877.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038876.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038882.1 | GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN |
| CAI8038883.1 | |
| CAI8038884.1 | |
| CAI8038885.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038886.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038887.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038889.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038888.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038890.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038891.1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| CAI8038893.1 | |
| CAI8038892.1 | |
| CAI8038894.1 | |
| CAI8038895.1 | |
| CAI8038897.1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| CAI8038898.1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| CAI8038896.1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| CAI8038899.1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| CAI8038900.1 | |
| CAI8038901.1 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
| CAI8038902.1 | |
| CAI8038907.1 | ACTIN |
| CAI8038906.1 | ACTIN |
| CAI8038905.1 | ACTIN |
| CAI8038904.1 | ACTIN |
| CAI8038903.1 | ACTIN |
| CAI8038908.1 | ACTIN |
| CAI8038911.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038910.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038909.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038913.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038915.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038914.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038912.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038916.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038917.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8038918.1 | PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
| CAI8038919.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8038920.1 | HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER |
