Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038671.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8038672.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8038673.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8038674.1 | CTP SYNTHASE |
| CAI8038675.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8038676.1 | |
| CAI8038677.1 | |
| CAI8038684.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038678.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038679.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038682.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038680.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038681.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038683.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038685.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038686.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038687.1 | |
| CAI8038688.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8038689.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8038693.1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
| CAI8038692.1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
| CAI8038691.1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
| CAI8038690.1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
| CAI8038694.1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
| CAI8038696.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8038695.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8038698.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8038699.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8038697.1 | RAN BINDING PROTEIN 9-RELATED |
| CAI8038700.1 | |
| CAI8038702.1 | UNCHARACTERIZED |
| CAI8038701.1 | UNCHARACTERIZED |
| CAI8038705.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8038706.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8038704.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8038703.1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 |
| CAI8038707.1 | |
| CAI8038708.1 | |
| CAI8038709.1 | |
| CAI8038710.1 | |
| CAI8038711.1 | |
| CAI8038712.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8038714.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8038713.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8038716.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| CAI8038715.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
| CAI8038720.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038721.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038722.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8038719.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
